Function reference • ScreenR

All functions
`annotation_table`	Table for the annotation of Barcode
`barcode_lost()`	Count number of barcode lost
`compute_data_table()`	Compute data Table
`compute_metrics()`	Compute Metrics
`compute_slope()`	Compute Slope of a Gene
`count_mapped_reads()`	Count the number of mapped read
`count_table`	Table of the count table
`create_edger_obj()`	Create edgeR Object
`create_screenr_object()`	Create the ScreenR Object
`filter_by_slope()`	Filter using the slope filter
`filter_by_variance()`	Filter using the variance filter
`find_camera_hit()`	Find Camera Hit
`find_common_hit()`	Find common hit
`find_roast_hit()`	Find Roast Hit
`find_robust_zscore_hit()`	Title Find robust Z-score Hit
`find_zscore_hit()`	Title Find Z-score Hit
`get_annotation_table()`	Get ScreenR annotation table
`get_count_table()`	Get ScreenR count table
`get_data_table()`	Get ScreenR data_table
`get_groups()`	Get ScreenR groups
`get_normalized_count_table()`	Get ScreenR normalized_count_table
`get_replicates()`	Get ScreenR replicates
`mapped_reads()`	Mapped Reads
`normalize_data()`	Normalize data
`plot_barcode_hit()`	Plot barcode hit
`plot_barcode_lost()`	Plot number of barcode lost
`plot_barcode_lost_for_gene()`	Plot number of barcode lost for gene
`plot_barcode_trend()`	Plot the trend over time of the barcodes
`plot_boxplot()`	Plot Barcodes Hit
`plot_common_hit()`	Plot common hit
`plot_explained_variance()`	Plot the explained variance by the PC
`plot_mapped_reads()`	Plot mapped reads
`plot_mapped_reads_distribution()`	Plot the distribution of the mapped reads
`plot_mds()`	Multidimensional Scaling Plot
`plot_trend()`	Plot the trend hit gene
`plot_zscore_distribution()`	Plot distribution Z-score
`remove_all_zero_row()`	Remove rows that have zero count in all samples
`set_annotation_table()`	Set ScreenR annotation table
`set_count_table()`	Set ScreenR count table
`set_data_table()`	Set ScreenR data_table
`set_groups()`	Set ScreenR groups
`set_normalized_count_table()`	Set ScreenR normalized_count_table
`set_replicates()`	Set ScreenR replicates

Reference

All functions