Package: SEtools
Type: Package
Title: SEtools: tools for working with SummarizedExperiment
Version: 1.25.0
Depends:
   R (>= 4.0),
   SummarizedExperiment,
   sechm
Authors@R: person("Pierre-Luc", "Germain", email="pierre-luc.germain@hest.ethz.ch", role=c("cre","aut"), comment=c(ORCID="0000-0003-3418-4218"))
Description: This includes a set of convenience functions for working with the SummarizedExperiment class. Note that plotting functions historically in this package have been moved to the sechm package (see vignette for details).
Imports: 
    BiocParallel,
    Matrix,
    DESeq2,
    S4Vectors,
    data.table,
    edgeR,
    openxlsx,
    pheatmap,
    stats,
    circlize,
    methods,
    sva
Suggests:
    BiocStyle,
    knitr,
    rmarkdown,
    ggplot2
biocViews: GeneExpression
VignetteBuilder: knitr 
License: GPL
Encoding: UTF-8
RoxygenNote: 7.3.2
BugReports: https://github.com/plger/SEtools
git_url: https://git.bioconductor.org/packages/SEtools
git_branch: devel
git_last_commit: beb739e
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
