Package: RiboCrypt
Type: Package
Title: Interactive visualization in genomics
Version: 1.17.0
Authors@R: c(
  person(given = "Michal", family = "Swirski", email = "michal.swirski@uw.edu.pl", role = c("aut", "cre", "cph")),
  person(given = "Haakon", family = "Tjeldnes", email = "hauken_heyken@hotmail.com", role = c("aut","ctb")),
  person(given = "Kornel", family = "Labun", email = "kornellabun@gmail.com", role = c("ctb")))
License: MIT + file LICENSE
Description: R Package for interactive visualization and browsing NGS data. 
  It contains a browser for both transcript and genomic coordinate view. 
  In addition a QC and general metaplots are included, among others differential translation plots 
  and gene expression plots. The package is still under development. 
biocViews: Software, Sequencing, RiboSeq, RNASeq,
Encoding: UTF-8
LazyData: true
BugReports: https://github.com/m-swirski/RiboCrypt/issues
URL: https://github.com/m-swirski/RiboCrypt
Depends:
  R (>= 3.6.0),
  ORFik (>= 1.13.12)
Imports:
  bslib,
  BiocGenerics,
  BiocParallel,
  Biostrings,
  ComplexHeatmap,
  cowplot,
  crosstalk,
  data.table,
  dplyr,
  DT,
  fst,
  Seqinfo,
  GenomicFeatures,
  GenomicRanges,
  ggplot2,
  grid,
  htmlwidgets,
  httr,
  IRanges,
  jsonlite,
  knitr,
  markdown,
  NGLVieweR,
  plotly,
  rlang,
  rclipboard,
  RCurl,
  rtracklayer,
  shiny,
  shinycssloaders,
  shinyhelper,
  shinyjs,
  shinyjqui,
  shinyWidgets,
  stringr,
  writexl
Suggests:
  testthat,
  rmarkdown,
  BiocStyle, 
  BSgenome,
  BSgenome.Hsapiens.UCSC.hg19
RoxygenNote: 7.3.1
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/RiboCrypt
git_branch: devel
git_last_commit: da58451
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
