Package: Rhisat2
Type: Package
Title: R Wrapper for HISAT2 Aligner
Version: 1.27.0
Authors@R: c(person("Charlotte", "Soneson", role = c("aut", "cre"), 
    email = "charlottesoneson@gmail.com", comment = c(ORCID = "0000-0003-3833-2169")))
SystemRequirements: GNU make
Description: An R interface to the HISAT2 spliced short-read aligner by 
    Kim et al. (2015). The package contains wrapper functions to create a 
    genome index and to perform the read alignment to the generated index.
License: GPL-3
Encoding: UTF-8
RoxygenNote: 7.3.1
Depends: R (>= 4.4.0)
Suggests: testthat,
    knitr,
    rmarkdown,
    BiocStyle
VignetteBuilder: knitr
biocViews: Alignment, Sequencing, SplicedAlignment
Imports: txdbmaker,
    SGSeq,
    GenomicRanges,
    methods,
    utils
URL: https://github.com/fmicompbio/Rhisat2
BugReports: https://github.com/fmicompbio/Rhisat2/issues
Archs: x64
git_url: https://git.bioconductor.org/packages/Rhisat2
git_branch: devel
git_last_commit: 28d0655
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
