Type: Package
Package: ReactomeGSA
Title: Client for the Reactome Analysis Service for comparative
    multi-omics gene set analysis
Version: 1.25.0
Authors@R: 
    person("Johannes", "Griss", , "johannes.griss@meduniwien.ac.at", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0003-2206-9511"))
Author: Johannes Griss [aut, cre]
    (<https://orcid.org/0000-0003-2206-9511>)
Maintainer: Johannes Griss <johannes.griss@meduniwien.ac.at>
Description: The ReactomeGSA packages uses Reactome's online analysis
    service to perform a multi-omics gene set analysis. The main advantage
    of this package is, that the retrieved results can be visualized using
    REACTOME's powerful webapplication.  Since Reactome's analysis service
    also uses R to perfrom the actual gene set analysis you will get
    similar results when using the same packages (such as limma and edgeR)
    locally.  Therefore, if you only require a gene set analysis,
    different packages are more suited.
License: MIT + file LICENSE
URL: https://github.com/reactome/ReactomeGSA
BugReports: https://github.com/reactome/ReactomeGSA/issues
Imports: 
    Biobase,
    BiocSingular,
    dplyr,
    ggplot2,
    gplots,
    httr,
    igraph,
    jsonlite,
    methods,
    progress,
    RColorBrewer,
    SummarizedExperiment,
    tidyr
Suggests: 
    devtools,
    knitr,
    ReactomeGSA.data,
    rmarkdown,
    scater,
    scran,
    scRNAseq,
    scuttle,
    Seurat (>= 3.0),
    SingleCellExperiment,
    testthat
VignetteBuilder: 
    knitr
biocViews: GeneSetEnrichment, Proteomics, Transcriptomics, SystemsBiology,
    GeneExpression, Reactome
Encoding: UTF-8
LazyData: false
RoxygenNote: 7.3.2
git_url: https://git.bioconductor.org/packages/ReactomeGSA
git_branch: devel
git_last_commit: 473b5b6
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
