Input parameters InputParam

parameter for a command tool. More details: https://www.commonwl.org/v1.0/CommandLineTool.html#CommandInputParameter

InputParam(
  id,
  label = "",
  type = "string",
  doc = character(),
  secondaryFiles = character(),
  streamable = logical(),
  format = character(),
  loadListing = character(),
  loadContents = logical(),
  position = 0L,
  prefix = "",
  separate = TRUE,
  itemSeparator = character(),
  valueFrom = character(),
  shellQuote = logical(),
  default = character(),
  value = character()
)

# S4 method for cwlProcess
$(x, name)

# S4 method for cwlProcess
$(x, name) <- value

Arguments

id	The unique identifier for this parameter object.
label	A short, human-readable label of this object.
type	valid types of data that may be assigned to this parameter.
doc	Optional. This argument takes an arbitrary documentation as a note for this object.
secondaryFiles	Only valid when type: File or is an array of items: File. Provides a pattern or expression specifying files or directories that must be included alongside the primary file.
streamable	Only valid when type: File or is an array of items: File. A value of true indicates that the file is read or written sequentially without seeking.
format	Only valid when type: File or is an array of items: File.
loadListing	Only valid when type: Directory or is an array of items: Directory.
loadContents	Only valid when type: File or is an array of items: File.
position	The position for this parameter.
prefix	Command line prefix to add before the value.
separate	If true (default), then the prefix and value must be added as separate command line arguments; if false, prefix and value must be concatenated into a single command line argument.
itemSeparator	Join the array elements into a single string with the elements separated by by itemSeparator.
valueFrom	String or Expression.
shellQuote	If ShellCommandRequirement is in the requirements for the current command, this controls whether the value is quoted on the command line (default is true).
default	The default value for this parameter
value	Assigned value for this parameter
x	A `cwlProcess` object.
name	One one of input list

Value

An object of class `InputParam`.

Examples

input1 <- InputParam(id = "sth")