Package: PIUMA
Type: Package
Title: Phenotypes Identification Using Mapper from topological data Analysis
Version: 1.7.0
Authors@R: c(
    person("Mattia", "Chiesa", , "mattia.chiesa@cardiologicomonzino.it", 
	role = c("aut", "cre"), comment = c(ORCID = "0000-0001-7427-9954")),
    person("Arianna", "Dagliati", , "arianna.dagliati@unipv.it",
	role = "aut", comment = c(ORCID = "0000-0002-5041-0409")),
	person("Alessia", "Gerbasi", , "alessia.gerbasi01@universitadipavia.it",
	role = "aut", comment = c(ORCID = "0000-0003-4501-1777")),
	person("Giuseppe", "Albi", , "giuseppe.albi01@universitadipavia.it",
	role = "aut"),
	person("Laura", "Ballarini", , "laura.ballarini01@universitadipavia.it",
	role = "aut"),
	person("Luca", "Piacentini", , "luca.piacentini@cardiologicomonzino.it",
	role = "aut", comment = c(ORCID = "0000-0003-1022-4481"))
  )
Description: The PIUMA package offers a tidy pipeline of Topological
        Data Analysis frameworks to identify and characterize 
		communities in high and heterogeneous dimensional data.
License: GPL-3 + file LICENSE
Encoding: UTF-8
LazyData: false
biocViews: Clustering, GraphAndNetwork, DimensionReduction, Network,
     Classification
VignetteBuilder: knitr
Imports: cluster, umap, tsne, kernlab, vegan, dbscan, igraph, scales,
    Hmisc, patchwork, grDevices, stats, methods, SummarizedExperiment
Suggests: BiocStyle, knitr, testthat, rmarkdown
Depends: R (>= 4.3), ggplot2
RoxygenNote: 7.2.3
URL: https://github.com/BioinfoMonzino/PIUMA
BugReports: https://github.com/BioinfoMonzino/PIUMA/issues
git_url: https://git.bioconductor.org/packages/PIUMA
git_branch: devel
git_last_commit: 02d3e61
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
