Package: PADOG
Version: 1.53.0
Date: 2020-1-31
Title: Pathway Analysis with Down-weighting of Overlapping Genes
        (PADOG)
Author: Adi Laurentiu Tarca <atarca@med.wayne.edu>; Zhonghui Xu <zhonghui.xu@gmail.com> 
Depends: R (>= 3.0.0), KEGGdzPathwaysGEO,
    methods,Biobase
Suggests: doParallel, parallel
Maintainer: Adi L. Tarca <atarca@med.wayne.edu>
Description: This package implements a general purpose gene set
        analysis method called PADOG that downplays the importance of
        genes that apear often accross the sets of genes to be
        analyzed. The package provides also a benchmark for gene set
        analysis methods in terms of sensitivity and ranking using 24
        public datasets from KEGGdzPathwaysGEO package.
License: GPL (>= 2)
URL:
Collate: padog.R compPADOG.R filteranot.R
Imports: limma,
    AnnotationDbi,
    GSA,
    foreach,
    doRNG,
    hgu133plus2.db,
    hgu133a.db,
    KEGGREST,
    nlme
LazyLoad: yes
biocViews: Microarray, OneChannel, TwoChannel
git_url: https://git.bioconductor.org/packages/PADOG
git_branch: devel
git_last_commit: 4e53350
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
