MSstatsBalancedDesign()
Creates balanced design by removing overlapping fractions and filling incomplete rows
MSstatsClean()
Clean files generated by a signal processing tools.
MSstatsConvert
MSstatsConvert: An R Package to Convert Data from Mass Spectrometry Signal Processing Tools to MSstats Format
MSstatsImport()
Import files from signal processing tools.
MSstatsLogsSettings()
Set how MSstats will log information from data processing
MSstatsMakeAnnotation()
Create annotation
MSstatsPreprocess()
Preprocess outputs from MS signal processing tools for analysis with MSstats
MSstatsSaveSessionInfo()
Save session information
.cleanRawPD()
Clean raw Proteome Discoverer data
getInputFile()
Get one of files contained in an instance of MSstatsInputFiles class.
MSstatsInputFiles