Get type of dataset from an MSstatsInputFiles object.

Get type of dataset from an MSstatsInputFiles object.

getDataType(msstats_object)

# S4 method for MSstatsInputFiles
getDataType(msstats_object)

Arguments

msstats_object	object that inherits from MSstatsInputFiles class.

Value

character - label of a data type. Currently, "MSstats" or "MSstatsTMT"

character "MSstats" or "MSstatsTMT".

Examples

evidence_path = system.file("tinytest/raw_data/MaxQuant/mq_ev.csv",
                            package = "MSstatsConvert")
pg_path = system.file("tinytest/raw_data/MaxQuant/mq_pg.csv",
                      package = "MSstatsConvert")
evidence = read.csv(evidence_path)
pg = read.csv(pg_path)
imported = MSstatsImport(list(evidence = evidence, protein_groups = pg),
                         "MSstats", "MaxQuant")
#> INFO  [2021-05-10 23:03:47] ** Raw data from MaxQuant imported successfully.
class(imported)
#> [1] "MSstatsMaxQuantFiles"
#> attr(,"package")
#> [1] "MSstatsConvert"
getDataType(imported) # "MSstats"
#> [1] "MSstats"