Clean raw PD output

Clean raw PD output

.cleanRawPDMSstats(
  msstats_object,
  quantification_column,
  protein_id_column,
  sequence_column,
  remove_shared
)

Arguments

msstats_object

an object of class MSstatsSpectroMineFiles.
quantification_column

chr, name of a column used for quantification.
protein_id_column

chr, name of a column with protein IDs.
sequence_column

chr, name of a column with peptide sequences.
remove_shared

lgl, if TRUE, shared peptides will be removed.

Value

data.table