MSstatsConvert: An R Package to Convert Data from Mass Spectrometry Signal Processing Tools to MSstats Format

MSstatsConvert helps convert data from different types of mass spectrometry experiments and signal processing tools to a format suitable for statistical analysis with the MSstats and MSstatsTMT packages.

Main functions

MSstatsLogsSettings for logs management, MSstatsImport for importing files created by signal processing tools, MSstatsClean for re-formatting imported files into a consistent format, MSstatsImport for preprocessing cleaned files, MSstatsBalancedDesign for handling fractions and creating balanced data.