Package: MSstatsConvert
Title: Import Data from Various Mass Spectrometry Signal Processing Tools to MSstats Format
Version: 1.21.0
Authors@R: c(
  person("Mateusz", "Staniak", email = "mtst@mstaniak.pl", role = c("aut","cre")),
  person("Devon", "Kohler", email = "kohler.d@northeastern.edu", role = "aut"),
  person("Anthony", "Wu", email = "wu.anthon@northeastern.edu", role = "aut"),
  person("Meena", "Choi", email = "mnchoi67@gmail.com", role = "aut"),
  person("Ting", "Huang", email = "thuang0703@gmail.com", role = "aut"),
  person("Olga", "Vitek", , email = "o.vitek@northeastern.edu", role = "aut")) 
Description: MSstatsConvert provides tools for importing reports of Mass Spectrometry data processing tools
    into R format suitable for statistical analysis using the MSstats and MSstatsTMT packages.
License: Artistic-2.0
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
biocViews: MassSpectrometry, Proteomics, Software, DataImport, QualityControl
Depends:
    R (>= 4.0)
Imports: 
    data.table,
    log4r,
    methods,
    checkmate,
    utils,
    stringi,
    Rcpp,
    parallel
Suggests: 
    tinytest,
    covr,
    knitr,
    arrow,
    rmarkdown
LinkingTo: Rcpp
Collate: 
    'clean_ProteinProspector.R'
    'clean_Metamorpheus.R'
    'clean_DIANN.R'
    'clean_Philosopher.R'
    'clean_Spectronaut.R'
    'clean_SpectroMine.R'
    'clean_Skyline.R'
    'clean_ProteomeDiscoverer.R'
    'clean_Progenesis.R'
    'clean_OpenSWATH.R'
    'clean_OpenMS.R'
    'clean_MaxQuant.R'
    'clean_DIAUmpire.R'
    'MSstatsConvert_core_functions.R'
    'RcppExports.R'
    'converters_DIANNtoMSstatsFormat.R'
    'converters_DIAUmpiretoMSstatsFormat.R'
    'converters_FragPipetoMSstatsFormat.R'
    'converters_MaxQtoMSstatsFormat.R'
    'converters_MetamorpheusToMSstatsFormat.R'
    'converters_OpenMStoMSstatsFormat.R'
    'converters_OpenSWATHtoMSstatsFormat.R'
    'converters_PDtoMSstatsFormat.R'
    'converters_ProgenesistoMSstatsFormat.R'
    'converters_ProteinProspectortoMSstatsTMTFormat.R'
    'converters_SkylinetoMSstatsFormat.R'
    'converters_SpectronauttoMSstatsFormat.R'
    'utils_MSstatsConvert.R'
    'utils_annotation.R'
    'utils_anomaly_score.R'
    'utils_balanced_design.R'
    'utils_checks.R'
    'utils_classes.R'
    'utils_clean_features.R'
    'utils_data_health.R'
    'utils_documentation.R'
    'utils_dt_operations.R'
    'utils_filtering.R'
    'utils_fractions.R'
    'utils_logging.R'
    'utils_shared_peptides.R'
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/MSstatsConvert
git_branch: devel
git_last_commit: c3ae371
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
