Package: MMUPHin
Type: Package
Title: Meta-analysis Methods with Uniform Pipeline for Heterogeneity in 
    Microbiome Studies
Version: 1.25.0
Author: Siyuan Ma
Maintainer: Siyuan MA <syma.research@gmail.com>
Description: MMUPHin is an R package for meta-analysis tasks of microbiome 
    cohorts. It has function interfaces for:
    a) covariate-controlled batch- and cohort effect adjustment, 
    b) meta-analysis differential abundance testing, 
    c) meta-analysis unsupervised discrete structure (clustering) discovery, and 
    d) meta-analysis unsupervised continuous structure discovery.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.2.1
VignetteBuilder: knitr
SystemRequirements:
    glpk (>= 4.57)
Depends: R (>= 3.6)
Imports:
    Maaslin2,
    metafor,
    fpc,
    igraph,
    ggplot2,
    dplyr,
    tidyr,
    stringr,
    cowplot,
    utils,
    stats,
    grDevices
Suggests: 
    testthat,
    BiocStyle, 
    knitr, 
    rmarkdown,
    magrittr,
    vegan,
    phyloseq,
    curatedMetagenomicData,
    genefilter
biocViews: Metagenomics, Microbiome, BatchEffect
git_url: https://git.bioconductor.org/packages/MMUPHin
git_branch: devel
git_last_commit: 0745fb3
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
