Package: MEAL
Title: Perform methylation analysis
Version: 1.41.0
Authors@R: c(person("Carlos", "Ruiz-Arenas", , "carlos.ruiz@isglobal.org", role = c("aut", "cre")),
  person("Juan R.", "Gonzalez", ,"juanr.gonzalez@isglobal.org", role = "aut"))
Maintainer: Xavier Escribà Montagut <xavier.escriba@isglobal.org>
Description: Package to integrate methylation and expression data. It can
    also perform methylation or expression analysis alone. Several plotting
    functionalities are included as well as a new region analysis based on
    redundancy analysis. Effect of SNPs on a region can also be estimated.
Depends:
    R (>= 3.6.0),
    Biobase,
    MultiDataSet
License: Artistic-2.0
biocViews: DNAMethylation, Microarray, Software, WholeGenome
LazyData: true
Imports:
    GenomicRanges,
    limma,
    vegan,
    BiocGenerics,
    minfi,
    IRanges,
    S4Vectors,
    methods,
    parallel,
    ggplot2 (>= 2.0.0),
    permute,
    Gviz,
    missMethyl,
    isva,
    SummarizedExperiment,
    SmartSVA,
    graphics,
    stats,
    utils,
    matrixStats
Suggests:
    testthat,
    IlluminaHumanMethylationEPICanno.ilm10b2.hg19,
    IlluminaHumanMethylation450kanno.ilmn12.hg19,
    knitr,
    minfiData,
    BiocStyle,
    rmarkdown,
    brgedata
VignetteBuilder: knitr
RoxygenNote: 7.1.1
Encoding: UTF-8
git_url: https://git.bioconductor.org/packages/MEAL
git_branch: devel
git_last_commit: 7b303c8
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
