Package: MBECS
Title: Evaluation and correction of batch effects in microbiome data-sets
Version: 1.15.0
Authors@R: 
    person(given = "Michael",
       family = "Olbrich",
       role = c("aut", "cre"),
       email = "M.Olbrich@protonmail.com",
       comment = c(ORCID = "0000-0003-2789-3382"))
Description: The Microbiome Batch Effect Correction Suite (MBECS) provides a set of functions to evaluate and mitigate unwated noise due to processing in batches. To that end it incorporates a host of batch correcting algorithms (BECA) from various packages. In addition it offers a correction and reporting pipeline that provides a preliminary look at the characteristics of a data-set before and after correcting for batch effects.
biocViews: BatchEffect, Microbiome, ReportWriting, Visualization, Normalization, QualityControl
URL: https://github.com/rmolbrich/MBECS
BugReports: https://github.com/rmolbrich/MBECS/issues/new
License: Artistic-2.0
Encoding: UTF-8
LazyData: false
RoxygenNote: 7.2.3
Imports: 
    methods,
    magrittr,
    phyloseq,
    limma,
    lme4,
    lmerTest,
    pheatmap,
    rmarkdown,
    cluster,
    dplyr,
    ggplot2,
    gridExtra,
    ruv,
    sva,
    tibble,
    tidyr,
    vegan,
    stats,
    utils,
    Matrix
Suggests: 
    knitr,
    markdown,
    BiocStyle,
    testthat (>= 3.0.0)
Depends: 
    R (>= 4.1)
Collate: 
    'MBECS-package.R'
    'data.R'
    'mbecs_classes.R'
    'mbecs_analyses.R'
    'mbecs_corrections.R'
    'mbecs_helper.R'
    'mbecs_plots.R'
    'mbecs_reports.R'
VignetteBuilder: knitr
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/MBECS
git_branch: devel
git_last_commit: 796859e
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
