Package: IONiseR
Title: Quality Assessment Tools for Oxford Nanopore MinION data
Version: 2.35.0
Authors@R: person("Mike", "Smith", email = "grimbough@gmail.com", role
        = c("aut", "cre"))
Description: IONiseR provides tools for the quality assessment of
    Oxford Nanopore MinION data. It extracts summary statistics
    from a set of fast5 files and can be used either before or
    after base calling.  In addition to standard summaries of the
    read-types produced, it provides a number of plots for
    visualising metrics relative to experiment run time or
    spatially over the surface of a flowcell.
License: MIT + file LICENSE
Depends:
    R (>= 3.4)
Imports:
    rhdf5,
    dplyr,
    magrittr,
    tidyr,
    ShortRead,
    Biostrings,
    ggplot2,
    methods,
    BiocGenerics,
    XVector,
    tibble,
    stats,
    BiocParallel,
    bit64,
    stringr,
    utils
VignetteBuilder: knitr
Suggests:
    BiocStyle,
    knitr,
    rmarkdown,
    gridExtra,
    testthat,
    minionSummaryData
biocViews: QualityControl, DataImport, Sequencing
NeedsCompilation: no
Author: Mike Smith [aut, cre]
Maintainer: Mike Smith <grimbough@gmail.com>
RoxygenNote: 6.0.1
Collate: 
    'IONiseR.R'
    'classes.R'
    'Methods-accessors.R'
    'Methods-subsetting.R'
    'fast5Readers.R'
    'fast5Status.R'
    'fast5readers_summary.R'
    'fast5utilities.R'
    'fastqProcessing.R'
    'plotting_kmers.R'
    'plotting_layout.R'
    'plotting_summaryStats.R'
    'processing_bam.R'
    'readSummary.R'
    'squiggle.R'
git_url: https://git.bioconductor.org/packages/IONiseR
git_branch: devel
git_last_commit: c0803bd
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
