Package: INSPEcT
Type: Package
Title: Modeling RNA synthesis, processing and degradation with RNA-seq data
Version: 1.41.0
Date: 2025-07-22
Author: Stefano de Pretis
Maintainer: Stefano de Pretis <ste.depo@gmail.com>, 
	Mattia Furlan <Mattia.Furlan@iit.it>
Description: INSPEcT (INference of Synthesis, Processing and 
	dEgradation rates from Transcriptomic data) RNA-seq data
	in time-course experiments or steady-state conditions, with
	or without the support of nascent RNA data.
License: GPL-2
Depends: R (>= 3.6), methods, Biobase, BiocParallel
Imports: pROC, deSolve, rootSolve, KernSmooth, readxl,
        GenomicFeatures, GenomicRanges, IRanges, BiocGenerics,
        GenomicAlignments, Rsamtools, S4Vectors, Seqinfo,
        DESeq2, plgem, rtracklayer, SummarizedExperiment, 
        TxDb.Mmusculus.UCSC.mm9.knownGene, shiny
Suggests: BiocStyle, knitr, rmarkdown
VignetteBuilder: knitr
biocViews: Sequencing, RNASeq, GeneRegulation, TimeCourse,
        SystemsBiology
NeedsCompilation: no
RoxygenNote: 7.1.1
git_url: https://git.bioconductor.org/packages/INSPEcT
git_branch: devel
git_last_commit: 54a4fbd
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
