Plot the distribution of concordance differences.

Plots the distribution of concordance differences, which are the differences between concordances of each pair of replicates from different conditions. A concordance can be understood as a confidence in a genomic position's assigned compartment. Mathematically, it is the log ratio of a genomic position's distance to each compartment's centroid, normalized by the distance between both centroids, and min-maxed to a [-1,1] interval.

plotConcordanceDifferences(object)

Arguments

object	A HiCDOCDataSet.

Value

A ggplot.

Examples

data(exampleHiCDOCDataSetProcessed)
plotConcordanceDifferences(exampleHiCDOCDataSetProcessed)
#> `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.