Package: HTSFilter
Type: Package
Title: Filter replicated high-throughput transcriptome sequencing data
Version: 1.51.0
Date: 2020-12-04
Authors@R: c(
  person(given="Andrea", 
         family="Rau", 
         email="andrea.rau@inrae.fr", 
         role=c("cre", "aut"), 
         comment = c(ORCID = "0000-0001-6469-488X")),
  person(given="Melina",
         family="Gallopin",
         role="ctb"),
  person(given="Gilles",
         family="Celeux",
         role="ctb"),
  person(given="Florence",
         family="Jaffrézic",
         role="ctb"))
Depends:
    R (>= 4.0.0)
Imports:
    edgeR,
    DESeq2,
    BiocParallel,
    Biobase,
    utils, stats, grDevices, graphics, methods
Suggests:
    EDASeq,
    testthat,
    knitr,
    rmarkdown,
    BiocStyle
Description: This package implements a filtering procedure for
    replicated transcriptome sequencing data based on a global
    Jaccard similarity index in order to identify genes with low,
    constant levels of expression across one or more experimental
    conditions.
License: Artistic-2.0
LazyLoad: yes
biocViews: Sequencing, RNASeq, Preprocessing, DifferentialExpression,
    GeneExpression, Normalization, ImmunoOncology
RoxygenNote: 7.1.1
VignetteBuilder: knitr
Encoding: UTF-8
git_url: https://git.bioconductor.org/packages/HTSFilter
git_branch: devel
git_last_commit: 675388a
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
