Package: HPiP
Type: Package
Title: Host-Pathogen Interaction Prediction
Version: 1.17.1
Authors@R: c(
    person("Matineh", "Rahmatbakhsh", ,"matinerb.94@gmail.com",c("aut","trl","cre")),
    person("Mohan", "Babu", ,"mohan.babu@uregina.ca", c("led")))
Description: HPiP (Host-Pathogen Interaction Prediction) uses an ensemble learning 
    algorithm for prediction of host-pathogen protein-protein interactions (HP-PPIs) 
    using structural and physicochemical descriptors computed from amino 
    acid-composition of host and pathogen proteins.The proposed package can effectively address 
    data shortages and data unavailability for HP-PPI network reconstructions. 
    Moreover, establishing computational frameworks in that regard will reveal 
    mechanistic insights into infectious diseases and suggest potential HP-PPI targets, 
    thus narrowing down the range of possible candidates for subsequent wet-lab experimental validations.
Depends: 
    R (>= 4.1)
Imports: 
    dplyr (>= 1.0.6),
    httr (>= 1.4.2),
    readr,
    tidyr,
    tibble,
    utils,
    stringr,
    magrittr,
    caret,
    corrplot,
    ggplot2,
    pROC,
    PRROC,
    igraph,
    graphics,
    stats,
    purrr,
    grDevices,
	protr,
	MCL
License: MIT + file LICENSE
Encoding: UTF-8
URL: https://github.com/mrbakhsh/HPiP
BugReports: https://github.com/mrbakhsh/HPiP/issues
VignetteBuilder: knitr
Suggests:
    rmarkdown,
    colorspace,
    e1071,
    kernlab,
    ranger,
    SummarizedExperiment,
    Biostrings,
    randomForest,
    gprofiler2,
    gridExtra,
    ggthemes,
    BiocStyle,
    BiocGenerics,
    RUnit,
    tools,
    knitr
biocViews: 
    Proteomics,
    SystemsBiology,
    NetworkInference,
    StructuralPrediction,
    GenePrediction,
    Network
RoxygenNote: 7.3.1
git_url: https://git.bioconductor.org/packages/HPiP
git_branch: devel
git_last_commit: e6c77ab
git_last_commit_date: 2025-11-23
Repository: Bioconductor 3.23
