HPA histology dataset

Source: R/hpa_histology_data.R

Dataset downloaded with hpaDownload('histology', version = 'latest'). This should be the most updated dataset at the time of generation. Check metadata for more information.

hpa_histology_data

Format

A list of 3 tibbles

normal_tissue

Normal tissue IHC data

pathology

Cancer IHC data

subcellular_location

Subcellular location IF data

See also

hpaDownload

Examples

  # load data
  data("hpa_histology_data")

  # access data frames
  normal_tissue_data <- hpa_histology_data$normal_tissue
  cancer_data <- hpa_histology_data$pathology
  subcell_location_data <- hpa_histology_data$subcellular_location
  
  # see metadata
  hpa_histology_data$metadata
#> $HPAversion
#> [1] "21.1"
#> 
#> $Ensemblversion
#> [1] "103.38"
#> 
#> $date
#> [1] "2022-08-26 09:47:00 CDT"
#> 
#> $packageVersion
#> [1] "1.15.0"
#>