Package: HERON
Type: Package
Date: 2024-08-22
Title: Hierarchical Epitope pROtein biNding
Version: 1.9.0
Authors@R: c(
    person(given="Sean",
           family = "McIlwain",
           role = c("aut", "cre"),
           email = "sean.mcilwain@wisc.edu",
           comment = c(ORCID="0000-0002-3820-8400")),
    person(given="Irene",
        family = "Ong",
        role = c("aut"),
        email = "irene.ong@wisc.edu",
        comment = c(ORCID="0000-0002-9353-6941"))
    )
Description: HERON is a software package for analyzing
    peptide binding array data. In addition to identifying 
    significant binding probes, HERON also provides functions 
    for finding epitopes (string of consecutive peptides 
    within a protein). HERON also calculates significance on 
    the probe, epitope, and protein level by employing meta 
    p-value methods.  HERON is designed for obtaining calls on the 
    sample level and calculates fractions of hits for different conditions.
License: GPL (>= 3)
URL: https://github.com/Ong-Research/HERON
BugReports: https://github.com/Ong-Research/HERON/issues
Encoding: UTF-8
LazyData: false
Imports:
    matrixStats,
    stats,
    data.table,
    harmonicmeanp,
    metap,
    cluster,
    spdep,
    Matrix,
    limma,
    methods
RoxygenNote: 7.3.1
biocViews: Microarray, Software
Suggests: 
    knitr,
    rmarkdown,
    testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
Depends: 
    R (>= 4.4.0),
    SummarizedExperiment (>= 1.1.6),
    GenomicRanges,
    IRanges,
    S4Vectors
git_url: https://git.bioconductor.org/packages/HERON
git_branch: devel
git_last_commit: 4b63635
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
