Function reference • GeoTcgaData

All functions
`differential_array()`	differential_array
`cal_mean_module()`	Find the mean value of the gene in each module
`countToFpkm()`	Convert count to FPKM
`countToTpm()`	Convert count to Tpm
`differential_cnv()`	Do chi-square test to find differential genes
`differential_CNV()`	Do difference analysis of gene level copy number variation data
`differential_limma()`	differential_limma
`differential_RNA()`	Do difference analysis of RNA-seq data
`differential_RNA_ucsc()`	Do difference analysis of RNA-seq data downloaded from ucsc
`differential_SNP()`	Do difference analysis of SNP data
`differential_SNP_tcga()`	Do difference analysis of SNP data downloaded from TCGAbiolinks
`fpkmToTpm_matrix()`	Convert fpkm to Tpm
`geneExpress`	a data.frame of gene expression data
`gene_ave()`	Average the values of same genes in gene expression profile
`gene_cov`	a data.frame of gene length and GC content
`GSE66705_sample2`	a matrix of gene expression data in GEO
`id_ava()`	Gene id conversion types
`id_conversion()`	Convert ENSEMBL gene id to gene Symbol in TCGA
`id_conversion()`	Gene id conversion
`kegg_liver`	a matrix of gene expression data in TCGA
`Merge_methy_tcga()`	Merge methylation data downloaded from TCGA
`methyDiff()`	Get methylation difference gene
`methydifferential_ucsc()`	Title
`module`	a matrix of module name, gene symbols, and the number of gene symbols
`prepare_chi()`	Preparer file for chi-square test
`profile`	a matrix of gene expression data in TCGA
`repAssign()`	Handle the case where one id corresponds to multiple genes
`repRemove()`	Handle the case where one id corresponds to multiple genes
`tcga_cli_deal()`	Combine clinical information obtained from TCGA and extract survival data
`ventricle`	a matrix of gene expression data in GEO

Reference

All functions