Package: GenomicInteractions
Type: Package
Title: Utilities for handling genomic interaction data
URL: https://github.com/ComputationalRegulatoryGenomicsICL/GenomicInteractions/
Version: 1.45.0
Date: 2025-07-22
Author: Harmston, N., Ing-Simmons, E., Perry, M., Baresic, A., Lenhard,
    B.
Maintainer: Liz Ing-Simmons <liz.ingsimmons@gmail.com>
Imports:
    Rsamtools,
    rtracklayer,
    GenomicRanges (>= 1.29.6),
    IRanges,
    BiocGenerics (>= 0.15.3),
    data.table,
    stringr,
    Seqinfo,
    ggplot2,
    grid,
    gridExtra,
    methods,
    igraph,
    S4Vectors (>= 0.13.13),
    dplyr,
    Gviz,
    Biobase,
    graphics,
    stats,
    utils,
    grDevices
Suggests:
    knitr,
    rmarkdown,
    BiocStyle,
    testthat
VignetteBuilder: knitr
Description: Utilities for handling genomic interaction data such as
    ChIA-PET or Hi-C, annotating genomic features with interaction
    information, and producing plots and summary statistics.
biocViews: Software,Infrastructure,DataImport,DataRepresentation,HiC
License: GPL-3
Depends:
    R (>= 3.5),
    InteractionSet
RoxygenNote: 7.1.2
git_url: https://git.bioconductor.org/packages/GenomicInteractions
git_branch: devel
git_last_commit: c3eb720
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
