Package: GenomicFiles
Title: Distributed computing by file or by range
Version: 1.47.0
Authors@R: c(
    person("Bioconductor Package Maintainer",
      email = "maintainer@bioconductor.org", role = c("aut", "cre")
    ),
    person("Valerie", "Obenchain", role = "aut"),
    person("Michael", "Love", role = "aut"),
    person("Lori", "Shepherd", role = "aut"),
    person("Martin", "Morgan", role = "aut"),
    person("Sonali", "Kumari", role = "ctb", comment =
      "Converted 'GenomicFiles' vignettes from Sweave to RMarkdown / HTML."
    ))
Description: This package provides infrastructure for parallel
    computations distributed 'by file' or 'by range'. User defined MAPPER
    and REDUCER functions provide added flexibility for data combination
    and manipulation.
License: Artistic-2.0
Depends:
    BiocGenerics,
    BiocParallel,
    GenomicRanges,
    MatrixGenerics,
    methods,
    Rsamtools (>= 2.25.1),
    rtracklayer (>= 1.69.1),
    SummarizedExperiment (>= 1.39.1)
Imports:
    BiocBaseUtils,
    GenomeInfoDb (>= 1.45.7),
    GenomicAlignments (>= 1.45.1),
    IRanges,
    S4Vectors,
    Seqinfo,
    VariantAnnotation (>= 1.55.1)
Suggests:
    BiocStyle,
    Biostrings,
    deepSNV,
    genefilter,
    Homo.sapiens,
    knitr,
    RNAseqData.HNRNPC.bam.chr14,
    RUnit,
    snpStats
VignetteBuilder:
    knitr
biocViews: Genetics, Infrastructure, DataImport, Sequencing, Coverage
RoxygenNote: 6.1.0
URL: https://github.com/Bioconductor/GenomicFiles
BugReports: https://github.com/Bioconductor/GenomicFiles/issues
Video: https://www.youtube.com/watch?v=3PK_jx44QTs
Collate:
    'GenomicFiles-class.R'
    'VcfStack-class.R'
    'reduceByFile-methods.R'
    'reduceByRange-methods.R'
    'reduceFiles.R'
    'reduceRanges.R'
    'reduceByYield.R'
    'pack-methods.R'
    'unpack-methods.R'
    'registry.R'
    'zzz.R'
git_url: https://git.bioconductor.org/packages/GenomicFiles
git_branch: devel
git_last_commit: 76a7462
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
