Package: GNOSIS
Type: Package
Title: Genomics explorer using statistical and survival analysis in R
Version: 1.9.0
Description: GNOSIS incorporates a range of R packages enabling users to 
    efficiently explore and visualise clinical and genomic data obtained
    from cBioPortal. GNOSIS uses an intuitive GUI and multiple tab panels 
    supporting a range of functionalities. These include data upload and initial 
    exploration, data recoding and subsetting, multiple visualisations, 
    survival analysis, statistical analysis and mutation analysis, in addition 
    to facilitating reproducible research.
Authors@R: c( 
    person("Lydia", "King", ,"l.king18@universityofgalway.ie",
      c("aut", "cre"), c(ORCID = "0000-0002-0696-9811")
    ),
    person("Marcel", "Ramos", ,"marcel.ramos@roswellpark.org", "ctb")
  )
License: MIT + file LICENSE
Imports:
    DT,
    fontawesome,
    shinycssloaders,
    cBioPortalData,
    shinyjs,
    reshape2,
    RColorBrewer,
    survival,
    survminer,
    stats,
    compareGroups,
    rpart,
    partykit,
    DescTools,
    car,
    rstatix,
    fabricatr,
    shinylogs,
    magrittr
Depends: 
    R (>= 4.3.0), 
    shiny, 
    shinydashboard, 
    shinydashboardPlus, 
    dashboardthemes, 
    shinyWidgets, 
    shinymeta, 
    tidyverse,
    operator.tools,
    maftools
Suggests: 
    BiocStyle, 
    knitr, 
    rmarkdown
biocViews:
    Software, ShinyApps, Survival, GUI
BugReports: https://github.com/Lydia-King/GNOSIS/issues
URL: https://github.com/Lydia-King/GNOSIS/
Video: https://doi.org/10.5281/zenodo.5788544
VignetteBuilder: knitr
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
git_url: https://git.bioconductor.org/packages/GNOSIS
git_branch: devel
git_last_commit: 507e621
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
