Package: GEOexplorer
Title: GEOexplorer: a webserver for gene expression analysis and visualisation
Date: 2023/10/31
Version: 1.17.0
Authors@R: 
  c(person(given = "Guy",
           family = "Hunt",
           role = c("aut", "cre"),
           email = "guy.hunt@kcl.ac.uk",
           comment = c(ORCID = "0000-0002-5217-2678")),
    person(given = "Rafael",
           family = "Henkin",
           role = c("ctb", "ths"),
           email = "r.henkin@qmul.ac.uk",
           comment = c(ORCID = "0000-0002-5511-5230")),
    person(given = "Alfredo",
           family = "Iacoangeli",
           role = c("ctb", "ths"),
           email = "alfredo.iacoangeli@kcl.ac.uk",
           comment = c(ORCID = "0000-0002-5280-5017")),
    person(given = "Fabrizio",
           family = "Smeraldi",
           role = c("ctb", "ths"),
           email = "f.smeraldi@qmul.ac.uk",
           comment = c(ORCID = "0000-0002-0057-8940")),
    person(given = "Michael",
           family = "Barnes",
           role = c("ctb", "ths"),
           email = "m.r.barnes@qmul.ac.uk",
           comment = c(ORCID = "0000-0001-9097-7381")))
Description: GEOexplorer is a webserver and R/Bioconductor package and web application
  that enables users to perform gene expression analysis. The development of 
  GEOexplorer was made possible because of the excellent code provided  by 
  GEO2R (https: //www.ncbi.nlm.nih.gov/geo/geo2r/).
License: GPL-3
Encoding: UTF-8
LazyData: false
Roxygen: list(markdown = TRUE)
URL: https://github.com/guypwhunt/GEOexplorer/
BugReports: https://github.com/guypwhunt/GEOexplorer/issues
RoxygenNote: 7.2.3
biocViews: 
  Software,
  GeneExpression,
  mRNAMicroarray,
  DifferentialExpression,
  Microarray,
  MicroRNAArray,
  Transcriptomics,
  RNASeq
Depends: 
    shiny,
    limma,
    Biobase,
    plotly,
    enrichR,
    R (>= 4.1.0)
Imports: 
  DT,
  XML,
  httr,
  sva,
  xfun,
  edgeR,
  htmltools,
  factoextra,
  heatmaply,
  pheatmap,
  scales,
  shinyHeatmaply,
  shinybusy,
  ggplot2,
  stringr,
  umap,
  GEOquery,
  impute,
  grDevices,
  stats,
  graphics,
  markdown,
  knitr,
  utils,
  xml2,
  R.utils,
  readxl,
  shinycssloaders,
  car
Suggests: 
    rmarkdown,
    usethis,
    testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/GEOexplorer
git_branch: devel
git_last_commit: d50a784
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
