Package: GDSArray
Title: Representing GDS files as array-like objects
Version: 1.31.0
Authors@R: c(
    person("Qian", "Liu", email = "qliu7@buffalo.edu", role=c("aut")),
    person("Martin", "Morgan", role = c("aut")),
    person("Hervé",  "Pagès", role = c("aut")),
    person("Xiuwen", "Zheng", email = "zhengx@u.washington.edu", role = c("aut", "cre")))
Description: GDS files are widely used to represent genotyping or
    sequence data. The GDSArray package implements the `GDSArray`
    class to represent nodes in GDS files in a matrix-like
    representation that allows easy manipulation (e.g., subsetting,
    mathematical transformation) in _R_. The data remains on disk
    until needed, so that very large files can be processed.
biocViews: Infrastructure, DataRepresentation, Sequencing, GenotypingArray
Depends:
    R (>= 3.5),
    gdsfmt,
    methods,
    BiocGenerics,
    DelayedArray (>= 0.5.32)
License: GPL-3
Encoding: UTF-8
URL: https://github.com/Bioconductor/GDSArray
BugReports: https://github.com/Bioconductor/GDSArray/issues
Imports: 
    tools,
    S4Vectors (>= 0.17.34),
    SNPRelate,
    SeqArray
RoxygenNote: 7.3.1
VignetteBuilder: knitr
Suggests:
    testthat,
    knitr,
    markdown,
    rmarkdown,
    BiocStyle,
    BiocManager
git_url: https://git.bioconductor.org/packages/GDSArray
git_branch: devel
git_last_commit: 4ed315e
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
