Package: FuseSOM
Title: A Correlation Based Multiview Self Organizing Maps Clustering For IMC Datasets
Version: 1.13.0
Authors@R: 
    person("Elijah", "Willie", , "ewil3501@uni.sydney.edu.au", role = c("aut", "cre"))
Description: A correlation-based multiview self-organizing map for the characterization of cell types in highly multiplexed in situ imaging cytometry assays (`FuseSOM`) 
    is a tool for unsupervised clustering. `FuseSOM` is robust and achieves high accuracy by 
    combining a `Self Organizing Map` architecture and a `Multiview` integration of 
    correlation based metrics. This allows FuseSOM to cluster highly multiplexed in situ imaging cytometry assays.
License: GPL-2
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.2
Imports:
        psych,
        FCPS,
        analogue,
        coop,
        pheatmap,
        ggplotify,
        fastcluster,
        fpc,
        ggplot2,
        stringr,
        ggpubr,
        proxy,
        cluster, 
        diptest,
        methods,
        SummarizedExperiment,
        stats,
        S4Vectors
LazyData: false
BuildResaveData: false
Depends: 
    R (>= 4.2.0)
Suggests: 
    knitr,
    BiocStyle,
    rmarkdown,
    SingleCellExperiment
VignetteBuilder: knitr
BugReports: https://github.com/ecool50/FuseSOM/issues
LinkingTo: Rcpp
biocViews: 
    SingleCell, CellBasedAssays, Clustering, Spatial
git_url: https://git.bioconductor.org/packages/FuseSOM
git_branch: devel
git_last_commit: e01d218
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
