Consensus
library(FEAST)
Consensus
TSCAN_Clust
original = TSCAN_Clust(Y, k=k)
Consensus
library(devtools)
document()
build_vignettes()
library(devtools)
library(FEAST)
nPro
data(Yan)
k = length(unique(trueclass))
Y = process_Y(Y, thre = 2)
# The core function.
ixs = FEAST(Y, k=k)
# look at the features
Ynorm = Norm_Y(Y)
par(mfrow = c(3,3))
for (i in 1:9){
tmp_ix = ixs[i]
tmp_gene = rownames(Ynorm)[tmp_ix]
boxplot(as.numeric(Ynorm[tmp_ix, ])~trueclass, main = tmp_gene, xlab="", ylab="", las=2)
}
FEAST
setUp_BPPARAM
library(devtools)
document()
build_vignettes()
build_vignettes()
library(FEAST)
detach("package:FEAST", unload = TRUE)
library(FEAST)
library(FEAST)
data(Yan)
k = length(unique(trueclass))
Y = process_Y(Y, thre = 2)
# The core function.
ixs = FEAST(Y, k=k)
# look at the features
Ynorm = Norm_Y(Y)
par(mfrow = c(3,3))
for (i in 1:9){
tmp_ix = ixs[i]
tmp_gene = rownames(Ynorm)[tmp_ix]
boxplot(as.numeric(Ynorm[tmp_ix, ])~trueclass, main = tmp_gene, xlab="", ylab="", las=2)
}
FEAST
debugonce(FEAST)
ixs = FEAST(Y, k=k)
setUp_BPPARAM
setUp_BPPARAM
rm(list=ls())
