Package: DNAcycP2
Title: DNA Cyclizability Prediction
Version: 1.3.0
Authors@R: 
    person("Brody", "Kendall", 
        email = "curtiskendall2025@u.northwestern.edu", 
        role = c("aut"))
    person("Keren", "Li",
        email = "kli@uab.edu",
        role = c("aut"))
    person("Ji-Ping", "Wang", 
        email = "jzwang@northwestern.edu", 
        role = c("aut", "cre"),
        comment = c(ORCID="0000-0002-8398-939X"))
Description: This package performs prediction of intrinsic cyclizability of of every 50-bp subsequence in a DNA sequence. The input could be a file either in FASTA or text format. The output will be the C-score, the estimated intrinsic cyclizability score for each 50 bp sequences in each entry of the sequence set.  
Depends: R (>= 4.4.0)
Imports:
  basilisk,
  reticulate
License: Artistic-2.0
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
StagedInstall: yes
BinaryFiles: inst/extdata/irlstm/saved_model.pb, inst/extdata/irlstm_smooth/saved_model.pb
biocViews: NeuralNetwork, StructuralPrediction
VignetteBuilder: knitr
Suggests: knitr, rmarkdown, BiocGenerics, RUnit, tinytest, BiocStyle, Biostrings
LazyData: false
URL: https://github.com/jipingw/DNAcycP2
BugReports: https://github.com/jipingw/DNAcycP2
git_url: https://git.bioconductor.org/packages/DNAcycP2
git_branch: devel
git_last_commit: 98b41bd
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
