Package: DEScan2
Type: Package
Title: Differential Enrichment Scan 2
Version: 1.31.0
Date: 2025-07-31
Authors@R: c(
    person("Dario", "Righelli", role=c("aut", "cre"), 
            email="dario.righelli@gmail.com"),
    person("John", "Koberstein", role="aut", email="jnkoberstein@gmail.com"),
    person("Bruce", "Gomes", role="aut", email="bruce.gomes@wsu.edu"),
    person("Nancy", "Zhang", role="aut", email="nzh@wharton.upenn.edu"),
    person("Claudia", "Angelini", role="aut", email="c.angelini@na.iac.cnr.it"),
    person("Lucia", "Peixoto", role="aut", email="lucia.peixoto@wsu.edu"),
    person("Davide", "Risso", role="aut", email="risso.davide@gmail.com>")
    )
Maintainer: Dario Righelli <dario.righelli@gmail.com>
Description: 
    Integrated peak and differential caller, specifically designed for
    broad epigenomic signals.
Encoding: UTF-8
License: Artistic-2.0
LazyData: TRUE
biocViews: ImmunoOncology, PeakDetection, Epigenetics, Software, Sequencing, Coverage
Depends: 
    R (>= 3.5),
    GenomicRanges
Imports:
    BiocParallel,
    BiocGenerics,
    ChIPpeakAnno,
    data.table,
    DelayedArray,
    Seqinfo,
    GenomeInfoDb,
    GenomicAlignments,
    glue,
    IRanges,
    plyr,
    Rcpp (>= 0.12.13),
    rtracklayer,
    S4Vectors (>= 0.23.19),
    SummarizedExperiment,
    tools,
    utils
LinkingTo: Rcpp, RcppArmadillo
RoxygenNote: 7.3.2
Suggests: 
    BiocStyle, 
    knitr, 
    rmarkdown, 
    testthat, 
    edgeR,
    limma,
    EDASeq, 
    RUVSeq, 
    RColorBrewer,
    statmod
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/DEScan2
git_branch: devel
git_last_commit: 788dce2
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
