Package: ClusterFoldSimilarity
Type: Package
Title: Calculate similarity of clusters from different single cell samples using foldchanges
Version: 1.7.0
Authors@R: person("Oscar", "Gonzalez-Velasco",
  email = "oscargvelasco@gmail.com",
  role = c("cre", "aut"),
  comment = c(ORCID = "0000-0002-5054-8635"))
Description: This package calculates a similarity coefficient using the fold changes of shared features (e.g. genes) among clusters of different samples/batches/datasets. The similarity coefficient is calculated using the dot-product (Hadamard product) of every pairwise combination of Fold Changes between a source cluster i of sample/dataset n and all the target clusters j in sample/dataset m
License: Artistic-2.0
Encoding: UTF-8
Imports:
    methods,
    igraph, 
    ggplot2,
    scales,
    BiocParallel,
    graphics, 
    stats, 
    utils,
    Matrix,
    cowplot,
    dplyr,
    reshape2,
    Seurat,
    SeuratObject,
    SingleCellExperiment,
    ggdendro
Suggests: 
    knitr,
    rmarkdown,
    kableExtra,
    scRNAseq,
    BiocStyle
RoxygenNote: 7.2.3
biocViews: SingleCell, Clustering, FeatureExtraction, GraphAndNetwork, GeneTarget, RNASeq
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/ClusterFoldSimilarity
git_branch: devel
git_last_commit: d5231f7
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
