Package: CluMSID
Type: Package
Title: Clustering of MS2 Spectra for Metabolite Identification
Version: 1.27.0
Authors@R: c(person("Tobias", "Depke", email = "depke@mailbox.org", 
    role = c("aut", "cre")),
    person("Raimo", "Franke", email = "raimo.franke@helmholtz-hzi.de",
    role = "ctb"),
    person("Mark", "Broenstrup", email = "mark.broenstrup@helmholtz-hzi.de",
    role = "ths"))
Maintainer: Tobias Depke <depke@mailbox.org>
Description: CluMSID is a tool that aids the identification of features 
    in untargeted LC-MS/MS analysis by the use of MS2 spectra similarity 
    and unsupervised statistical methods. It offers functions for a complete 
    and customisable workflow from raw data to visualisations and is
    interfaceable with the xmcs family of preprocessing packages.
License: MIT + file LICENSE
Encoding: UTF-8
URL: https://github.com/tdepke/CluMSID
BugReports: https://github.com/tdepke/CluMSID/issues
LazyData: true
Depends:
    R (>= 3.6)
biocViews: Metabolomics, Preprocessing, Clustering
Imports:
    mzR,
    S4Vectors,
    dbscan,
    RColorBrewer,
    ape,
    network,
    GGally,
    ggplot2,
    plotly,
    methods,
    utils,
    stats,
    sna,
    grDevices,
    graphics,
    Biobase,
    gplots,
    MSnbase
RoxygenNote: 6.1.1
Suggests: knitr,
    rmarkdown,
    testthat,
    dplyr,
    readr,
    stringr,
    magrittr,
    CluMSIDdata,
    metaMS,
    metaMSdata,
    xcms
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/CluMSID
git_branch: devel
git_last_commit: 4f5bb4a
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
