Swap main & alternative Experiments, with fixed colData

swapAltExp_sameColData(scExp, alt)

Arguments

scExp	A SingleCellExperiment
alt	Name of the alternative experiment

Value

A swapped SingleCellExperiment with the exact same colData.

Examples

data(scExp) 
swapAltExp_sameColData(scExp, "peaks")
#> ChromSCape::swapAltExp_sameColData - peaks not in altExpNames(scExp), returning unchanged scExp.
#> class: SingleCellExperiment 
#> dim: 5499 106 
#> metadata(6): hc_cor consclust ... diff enr
#> assays(2): counts normcounts
#> rownames(5499): chr1_6025000_6030000 chr1_20185000_20190000 ...
#>   chrX_154395000_154400000 chrX_154545000_154550000
#> rowData names(4): ID Gene distanceToTSS top_feature
#> colnames(106): scChIP_Jurkat_K4me3_BC1062721
#>   scChIP_Jurkat_K4me3_BC12143233 ... scChIP_Ramos_K4me3_BC78985057
#>   scChIP_Ramos_K4me3_BC9280513
#> colData names(9): barcode cell_id ... cell_cluster cell_cluster_color
#> reducedDimNames(3): PCA UMAP Cor
#> mainExpName: main
#> altExpNames(0):