Separate BAM files into cell cluster BAM files

Separate BAM files into cell cluster BAM files

separate_BAM_into_clusters(affectation, odir, merged_bam)

Arguments

affectation	An annotation data.frame containing cell_id and cell_cluster columns
odir	A valid output directory path
merged_bam	A list of merged bam file paths @importFrom Rsamtools filterBam ScanBamParam

Value

Create one BAM per cluster from one BAM per condition