Run pairwise tests

Source: R/diff_analysis_gene_set_enrichment.R

Run pairwise tests

run_pairwise_tests(
  affectation,
  nclust,
  counts,
  feature,
  method,
  progress = NULL,
  BPPARAM = BiocParallel::bpparam()
)

Arguments

affectation

An annotation data.frame with cell_cluster and cell_id columins
nclust

Number of clusters
counts

Count matrix
feature

Feature data.frame
method

DA method, Wilcoxon or edgeR
progress

A shiny Progress instance to display progress bar.
BPPARAM

BPPARAM object for multiprocessing. See bpparam for more informations. Will take the default BPPARAM set in your R session.

Value

A list containing objects for DA function