Resutls of hypergeometric gene set enrichment test

Source: R/diff_analysis_gene_set_enrichment.R

Run hypergeometric enrichment test and combine significant pathways into a data.frame

results_enrichmentTest(
  differentialGenes,
  enrichment_qval,
  GeneSets,
  GeneSetsDf,
  GenePool
)

Arguments

differentialGenes

Genes significantly over / under expressed
enrichment_qval

Adusted p-value threshold above which a pathway is considered significative
GeneSets

List of pathways
GeneSetsDf

Data.frame of pathways
GenePool

Pool of possible genes for testing

Value

A data.frame with pathways passing q.value threshold