R/preprocessing_filtering_reduction.R
preprocess_RPKM.RdPreprocess scExp - Read per Kilobase Per Million (RPKM)
preprocess_RPKM(scExp)
| scExp | A SingleCellExperiment Object |
|---|
A SingleCellExperiment object.
#>#> 6 x 300 sparse Matrix of class "dgCMatrix"#>#> #> chr1_1_5147117 0.05499628 1.49689620 . . 5.68924049 . #> chr1_5147118_10294233 . 0.02721630 . 0.01432981 0.02696323 0.02830471 #> chr1_10294234_15441350 . . . . . 0.01415235 #> chr1_15441351_20588466 . . . . . . #> chr1_20588467_25735583 . 0.01360815 . 0.01432981 . 0.05660942 #> chr1_25735584_30882699 . 0.01360815 . . . . #> #> chr1_1_5147117 . 0.02126804 0.01827175 0.03462239 . #> chr1_5147118_10294233 . 0.02126804 0.05481526 0.03462239 0.03731558 #> chr1_10294234_15441350 0.01597726 0.04253607 . . 0.03731557 #> chr1_15441351_20588466 0.03195453 0.04253608 . . . #> chr1_20588467_25735583 . . . . 2.83598337 #> chr1_25735584_30882699 . 0.04253608 . . 0.59704925 #> #> chr1_1_5147117 0.01330709 0.03566144 0.57524251 0.05994555 . #> chr1_5147118_10294233 0.07984256 0.01783072 0.03711243 5.55495512 0.01318965 #> chr1_10294234_15441350 0.02661418 . 0.01855621 . 5.68473838 #> chr1_15441351_20588466 5.24299460 . . . . #> chr1_20588467_25735583 1.95614227 . . 0.11989109 0.01318965 #> chr1_25735584_30882699 4.67078960 . . . . #> #> chr1_1_5147117 . 0.01452696 0.0170081 . 0.08908819 #> chr1_5147118_10294233 3.16389663 . 0.0170081 0.01541444 0.01781764 #> chr1_10294234_15441350 0.01691923 4.09660178 3.7077656 0.01541443 . #> chr1_15441351_20588466 . 0.01452696 . . . #> chr1_20588467_25735583 . . . . . #> chr1_25735584_30882699 . . 0.0170081 0.09248662 . #> #> chr1_1_5147117 0.04630944 . 3.24161730 . 0.03381784 #> chr1_5147118_10294233 0.01543648 . . . . #> chr1_10294234_15441350 . 0.01842423 . . . #> chr1_15441351_20588466 0.09261889 . 2.36812807 . 4.73449919 #> chr1_20588467_25735583 . . 0.03882176 . . #> chr1_25735584_30882699 . . . 0.02054606 . #> #> chr1_1_5147117 . 6.983821 . . 0.11506279 #> chr1_5147118_10294233 . . 0.01528107 0.17416724 . #> chr1_10294234_15441350 . . 0.01528107 0.02902787 0.01917713 #> chr1_15441351_20588466 0.0273504 1.985460 0.03056215 0.02902787 . #> chr1_20588467_25735583 . . . . . #> chr1_25735584_30882699 . 1.096863 . . 0.01917714 #> #> chr1_1_5147117 0.02923535 . 0.02401824 . 0.0166724 #> chr1_5147118_10294233 . . . . 1.8839820 #> chr1_10294234_15441350 . . . . . #> chr1_15441351_20588466 . 0.0300423 . 0.01613785 . #> chr1_20588467_25735583 0.01461767 . 0.02401824 . . #> chr1_25735584_30882699 1.18403190 . 0.02401824 0.03227570 . #> #> chr1_1_5147117 . 0.01833382 . . . #> chr1_5147118_10294233 0.01940895 5.18847281 . . 0.01663387 #> chr1_10294234_15441350 0.01940894 . 4.4322 . . #> chr1_15441351_20588466 . . . 1.7215 . #> chr1_20588467_25735583 0.03881789 . . . . #> chr1_25735584_30882699 . 3.02508132 . . . #> #> chr1_1_5147117 0.01811670 . 0.03862495 . 2.735517 0.02350109 . #> chr1_5147118_10294233 0.03623341 . 0.03862496 . . . . #> chr1_10294234_15441350 0.03623341 . . . . . 0.01766856 #> chr1_15441351_20588466 0.01811671 . . . 3.307349 . 0.01766857 #> chr1_20588467_25735583 0.01811670 . . . . 0.01175055 0.01766856 #> chr1_25735584_30882699 . . 0.01931248 . . 0.01175055 0.01766857 #> #> chr1_1_5147117 . 3.416166 0.01465185 . . #> chr1_5147118_10294233 . . 0.02930370 . 0.03042097 #> chr1_10294234_15441350 . 0.029198 . . . #> chr1_15441351_20588466 . . . . 0.04563146 #> chr1_20588467_25735583 0.04318371 0.014599 . 0.1019772 . #> chr1_25735584_30882699 . . . . . #> #> chr1_1_5147117 0.02695761 . . 4.023872 0.03619291 #> chr1_5147118_10294233 . . . . 2.73256492 #> chr1_10294234_15441350 . . . . 0.01809645 #> chr1_15441351_20588466 . 0.03495566 . . . #> chr1_20588467_25735583 . 0.01747783 0.0462213 . 0.01809645 #> chr1_25735584_30882699 . 0.01747783 . . . #> #> chr1_1_5147117 0.040421 0.05865606 0.0186542 1.47826090 . #> chr1_5147118_10294233 . . . 0.01539855 . #> chr1_10294234_15441350 . . . 0.01539855 0.01882045 #> chr1_15441351_20588466 . . . 2.91032671 0.03764091 #> chr1_20588467_25735583 . 0.01466401 . . 0.01882045 #> chr1_25735584_30882699 . 0.01466402 . 0.01539855 . #> #> chr1_1_5147117 0.01809814 . 0.1039267 . . #> chr1_5147118_10294233 . 0.02939237 . . 0.01722219 #> chr1_10294234_15441350 . 0.01469618 . 0.01942253 0.01722219 #> chr1_15441351_20588466 . . . 0.05826759 . #> chr1_20588467_25735583 . 0.02939236 . 0.01942253 . #> chr1_25735584_30882699 0.01809814 . 5.1369487 . 0.01722219 #> #> chr1_1_5147117 0.0350914 . . 0.0313108 1.14979301 #> chr1_5147118_10294233 0.0175457 . . 0.0156554 . #> chr1_10294234_15441350 . . . 0.0156554 0.03150118 #> chr1_15441351_20588466 . . 0.03147312 2.4265875 2.55159595 #> chr1_20588467_25735583 . . 0.04720967 0.0156554 0.01575059 #> chr1_25735584_30882699 . 0.03951664 0.01573656 . 0.01575059 #> #> chr1_1_5147117 . . . 0.01510054 . 0.03704873 #> chr1_5147118_10294233 . . . . 0.01690745 . #> chr1_10294234_15441350 0.01665954 . 0.01219455 . 3.51674979 . #> chr1_15441351_20588466 . . . 0.04530162 0.03381491 . #> chr1_20588467_25735583 . . . . . 0.01852436 #> chr1_25735584_30882699 . . . 0.01510054 . 5.26092009 #> #> chr1_1_5147117 0.01459791 0.03137147 . 6.05457040 . #> chr1_5147118_10294233 2.83199413 . . 0.06199220 . #> chr1_10294234_15441350 0.01459791 0.03137147 0.01694136 0.02066406 . #> chr1_15441351_20588466 . . . 0.06199220 5.63302937 #> chr1_20588467_25735583 . 0.01568574 . . . #> chr1_25735584_30882699 0.01459791 . 7.20007947 . 0.01865242 #> #> chr1_1_5147117 . 0.06025541 . . . #> chr1_5147118_10294233 . . 0.01378875 . . #> chr1_10294234_15441350 . . 0.02757750 0.02656324 0.02943244 #> chr1_15441351_20588466 0.03346543 . 1.32372047 . . #> chr1_20588467_25735583 . . . 0.01328162 0.01471622 #> chr1_25735584_30882699 0.03346543 0.04017028 . . . #> #> chr1_1_5147117 . . . . 0.01735449 #> chr1_5147118_10294233 . . 0.05932322 . . #> chr1_10294234_15441350 1.17168286 . . . . #> chr1_15441351_20588466 . . . 0.01823574 . #> chr1_20588467_25735583 0.03083376 . 2.57067251 0.01823573 . #> chr1_25735584_30882699 . 0.3267897 . 0.01823574 0.03470899 #> #> chr1_1_5147117 0.03390046 . . . . #> chr1_5147118_10294233 . . . 0.02337105 0.02885971 #> chr1_10294234_15441350 . 2.94113660 . . . #> chr1_15441351_20588466 . . 0.01477105 . 0.01442985 #> chr1_20588467_25735583 . 0.03063684 . . . #> chr1_25735584_30882699 . . 0.02954209 . . #> #> chr1_1_5147117 . 0.04037899 0.04213479 . 0.0312730 #> chr1_5147118_10294233 0.09708515 . . . 4.3782210 #> chr1_10294234_15441350 . . . . . #> chr1_15441351_20588466 0.01618086 0.02018950 . . . #> chr1_20588467_25735583 . . . 0.01614992 0.0156365 #> chr1_25735584_30882699 . . . . 4.9411351 #> #> chr1_1_5147117 . . . . . #> chr1_5147118_10294233 . . . 1.66559046 0.01524989 #> chr1_10294234_15441350 0.02131938 . . . 0.01524988 #> chr1_15441351_20588466 . . 0.09416765 0.03028346 . #> chr1_20588467_25735583 0.02131938 0.0183737 3.54698079 . . #> chr1_25735584_30882699 . . 0.03138922 . 0.01524989 #> #> chr1_1_5147117 . . . 0.03260064 0.01698728 #> chr1_5147118_10294233 . 0.1071318 . . 0.01698728 #> chr1_10294234_15441350 . 0.0178553 0.01756473 0.01630032 0.01698728 #> chr1_15441351_20588466 1.798766 . 0.01756474 0.03260065 . #> chr1_20588467_25735583 . . . . . #> chr1_25735584_30882699 . 6.3029221 . 0.01630032 0.01698728 #> #> chr1_1_5147117 0.01691334 0.05173306 . . . #> chr1_5147118_10294233 0.01691334 0.01293327 . 0.26571363 . #> chr1_10294234_15441350 . . 0.04065785 4.47024024 0.02206012 #> chr1_15441351_20588466 . 0.01293327 . 0.01563021 . #> chr1_20588467_25735583 . . 0.06098677 . 0.02206012 #> chr1_25735584_30882699 0.01691334 0.02586654 0.06098678 . . #> #> chr1_1_5147117 . 0.02637751 . . . . #> chr1_5147118_10294233 . . . 0.01389626 0.02185909 . #> chr1_10294234_15441350 . 5.24912364 . . . 0.01657992 #> chr1_15441351_20588466 0.01461768 . . . 0.04371817 . #> chr1_20588467_25735583 . 0.01318875 . 3.32120455 . . #> chr1_25735584_30882699 . . . . . . #> #> chr1_1_5147117 . . . 0.01432558 0.04101982 . #> chr1_5147118_10294233 . 1.21862446 . . 0.01367327 . #> chr1_10294234_15441350 . 2.83290565 . . 0.01367327 0.01394613 #> chr1_15441351_20588466 . . . . 2.20139718 . #> chr1_20588467_25735583 . 0.01582629 . 0.02865116 . 0.02789226 #> chr1_25735584_30882699 . . . 0.02865117 4.23871507 . #> #> chr1_1_5147117 . . 0.1070040 . . . #> chr1_5147118_10294233 0.04341532 0.82248372 . 0.03382079 . . #> chr1_10294234_15441350 0.02894354 . 0.2853439 . . . #> chr1_15441351_20588466 . 0.01612713 . . . . #> chr1_20588467_25735583 . . 3.3171227 0.03382079 . . #> chr1_25735584_30882699 1.63531038 . . . . 0.03155747 #> #> chr1_1_5147117 . 1.25495458 . . . #> chr1_5147118_10294233 . 0.02758142 0.01898413 0.03956895 . #> chr1_10294234_15441350 . . 0.07593649 4.51085969 0.01779968 #> chr1_15441351_20588466 . 0.01379071 . . . #> chr1_20588467_25735583 4.250664 . . 2.76982613 0.01779968 #> chr1_25735584_30882699 . . 2.60082540 0.01978448 0.01779968 #> #> chr1_1_5147117 . . . 0.02966161 . . #> chr1_5147118_10294233 0.03741259 . . 0.01483081 . . #> chr1_10294234_15441350 . 3.282628 . 0.01483080 0.01229409 0.01605118 #> chr1_15441351_20588466 5.14423049 . . . 0.73764560 . #> chr1_20588467_25735583 . . . . . . #> chr1_25735584_30882699 . . . . . . #> #> chr1_1_5147117 0.01582242 . . . . #> chr1_5147118_10294233 0.01582242 0.02737352 . . 0.0138893 #> chr1_10294234_15441350 1.66135430 . . 0.01909045 0.0138893 #> chr1_15441351_20588466 4.92077416 . . 0.01909045 . #> chr1_20588467_25735583 0.01582242 . 2.218954 . 0.0277786 #> chr1_25735584_30882699 0.01582242 . . . 0.0138893 #> #> chr1_1_5147117 2.73383760 . . . 0.8825095 0.01426248 #> chr1_5147118_10294233 . 2.4526653 . . . . #> chr1_10294234_15441350 0.50693677 0.0360686 . . . . #> chr1_15441351_20588466 . . . . . . #> chr1_20588467_25735583 . 0.0360686 0.01381228 . . . #> chr1_25735584_30882699 0.01810489 . 1.32597905 . . . #> #> chr1_1_5147117 . . 0.01309718 . . #> chr1_5147118_10294233 . . . . . #> chr1_10294234_15441350 1.305121 . 2.95996192 2.016342 . #> chr1_15441351_20588466 . . . . 4.48456764 #> chr1_20588467_25735583 . . 0.01309718 . 0.09541631 #> chr1_25735584_30882699 . 0.03523779 0.01309718 . 0.01590272 #> #> chr1_1_5147117 0.01472849 0.01427296 5.43934037 . 0.04168280 #> chr1_5147118_10294233 . . 0.01869189 4.08578373 0.01389427 #> chr1_10294234_15441350 . . . 0.12711325 . #> chr1_15441351_20588466 . 1.81266615 . . . #> chr1_20588467_25735583 . 0.02854592 . 0.03631807 0.02778853 #> chr1_25735584_30882699 . . . . 0.01389427 #> #> chr1_1_5147117 . . . . . #> chr1_5147118_10294233 0.01914690 0.05474833 . . 0.01340534 #> chr1_10294234_15441350 . . 0.0361525 . 0.01340533 #> chr1_15441351_20588466 . . . . . #> chr1_20588467_25735583 0.01914689 . . 0.01977843 . #> chr1_25735584_30882699 0.01914690 . . . 0.41556546 #> #> chr1_1_5147117 . 0.05142950 . . . #> chr1_5147118_10294233 . . 0.0179759 0.01561263 . #> chr1_10294234_15441350 0.01426248 0.01714317 . 0.06245050 . #> chr1_15441351_20588466 0.01426248 0.78858586 . 0.09367577 0.03507873 #> chr1_20588467_25735583 . 0.01714317 0.0179759 . . #> chr1_25735584_30882699 3.79382072 0.01714317 3.1278071 0.03122526 . #> #> chr1_1_5147117 . 0.02849359 . . . #> chr1_5147118_10294233 0.02752477 0.01424680 . . . #> chr1_10294234_15441350 . 0.85480759 0.02828822 . 0.01581083 #> chr1_15441351_20588466 4.29386339 . . . . #> chr1_20588467_25735583 0.01376238 0.01424679 . 0.01996337 0.01581083 #> chr1_25735584_30882699 0.01376238 3.19128229 0.01414411 0.01996337 . #> #> chr1_1_5147117 0.040556 0.01595365 . . . #> chr1_5147118_10294233 . . 0.01421968 . 0.54383081 #> chr1_10294234_15441350 0.020278 0.03190729 0.04265905 5.03259784 . #> chr1_15441351_20588466 . 0.01595365 . 0.01577617 . #> chr1_20588467_25735583 0.020278 . 0.01421968 . . #> chr1_25735584_30882699 . . 1.08069606 . 0.01699471 #> #> chr1_1_5147117 0.04641639 0.0176157 0.05728824 0.03807614 0.02871892 #> chr1_5147118_10294233 . . . . 0.01435946 #> chr1_10294234_15441350 3.46575680 . 3.53277481 5.27354577 . #> chr1_15441351_20588466 . . . 0.03807615 . #> chr1_20588467_25735583 0.03094426 0.0176157 0.01909608 2.43687314 . #> chr1_25735584_30882699 . . . . . #> #> chr1_1_5147117 . . 0.01491048 . . #> chr1_5147118_10294233 . . . 0.04871704 . #> chr1_10294234_15441350 0.01602338 0.01743078 . 0.02435852 . #> chr1_15441351_20588466 . 1.16786275 . 0.04871704 . #> chr1_20588467_25735583 . 0.03486157 . . . #> chr1_25735584_30882699 . . . . 0.01648566 #> #> chr1_1_5147117 0.03109531 . . . . #> chr1_5147118_10294233 . 0.01574932 0.01747783 0.01284265 . #> chr1_10294234_15441350 . 0.01574931 . . . #> chr1_15441351_20588466 . 0.03149863 0.01747783 . 0.07225123 #> chr1_20588467_25735583 . . 0.03495565 . . #> chr1_25735584_30882699 0.03109532 0.01574932 . 0.01284265 2.91413292 #> #> chr1_1_5147117 . . . . . #> chr1_5147118_10294233 0.11480541 0.02670197 . 0.03094673 0.01826832 #> chr1_10294234_15441350 . 0.01335098 . . 0.01826831 #> chr1_15441351_20588466 . . . . 0.03653663 #> chr1_20588467_25735583 . . 0.2667997 . . #> chr1_25735584_30882699 0.03280155 . . 0.01547336 0.03653663 #> #> chr1_1_5147117 0.05201701 0.02078788 . . 0.01537783 #> chr1_5147118_10294233 . 5.84139517 . . . #> chr1_10294234_15441350 7.54246591 . 0.01657568 0.01297299 . #> chr1_15441351_20588466 . . 0.01657568 . 4.15201521 #> chr1_20588467_25735583 . 0.02078788 0.04972703 0.02594598 0.01537783 #> chr1_25735584_30882699 . . 2.95047120 . . #> #> chr1_1_5147117 . 0.10291349 2.72374293 . . #> chr1_5147118_10294233 . 0.01715225 . 0.01338502 . #> chr1_10294234_15441350 0.03184976 0.03430450 . . . #> chr1_15441351_20588466 . . 0.01521644 . 0.01704541 #> chr1_20588467_25735583 . . . . 5.02839427 #> chr1_25735584_30882699 . 0.01715225 3.91062609 0.01338502 . #> #> chr1_1_5147117 . . . 4.90369658 . #> chr1_5147118_10294233 . . . 0.01566677 . #> chr1_10294234_15441350 0.03180544 . 0.01276166 . 4.713448 #> chr1_15441351_20588466 . . 0.02552333 0.01566677 . #> chr1_20588467_25735583 0.01590272 0.04367558 . 0.59533696 6.898149 #> chr1_25735584_30882699 . 0.02911706 . . . #> #> chr1_1_5147117 0.01829239 0.01498870 . 0.03583906 . #> chr1_5147118_10294233 . 0.02997740 . . 0.01656155 #> chr1_10294234_15441350 0.01829239 . 0.01555015 . 0.01656155 #> chr1_15441351_20588466 . 0.04496611 . . 0.01656155 #> chr1_20588467_25735583 . 0.59954797 . . . #> chr1_25735584_30882699 . . . 0.03583906 . #> #> chr1_1_5147117 0.02029707 0.01589361 . . 0.01573528 0.01984713 #> chr1_5147118_10294233 . . . 0.03197031 . 0.01984713 #> chr1_10294234_15441350 . . . 0.01598515 . . #> chr1_15441351_20588466 0.06089121 0.01589362 . 0.01598515 . . #> chr1_20588467_25735583 0.04059413 . . 0.01598515 . . #> chr1_25735584_30882699 3.57228436 0.03178723 . 0.01598515 . . #> #> chr1_1_5147117 5.94292066 . 0.01501302 1.65222684 . #> chr1_5147118_10294233 0.01851378 0.02722583 . . . #> chr1_10294234_15441350 . 0.04083874 0.01501302 . 0.01843122 #> chr1_15441351_20588466 . 1.60632424 . . 0.01843123 #> chr1_20588467_25735583 . 0.04083874 0.01501302 0.05507423 . #> chr1_25735584_30882699 . . . . . #> #> chr1_1_5147117 . 0.03216082 . . 0.03192302 #> chr1_5147118_10294233 0.03262254 0.01608041 . 0.02676635 . #> chr1_10294234_15441350 . . . 0.01338317 . #> chr1_15441351_20588466 . . . . 0.92576785 #> chr1_20588467_25735583 0.04893381 . 0.89423798 . 0.01596151 #> chr1_25735584_30882699 5.48058726 . 0.05503004 0.01338318 . #> #> chr1_1_5147117 0.0161822 . . 0.09141893 . #> chr1_5147118_10294233 . . . . . #> chr1_10294234_15441350 . . 0.0155626 . . #> chr1_15441351_20588466 . 0.01454981 . . . #> chr1_20588467_25735583 . . 0.0155626 1.02389206 0.837062 #> chr1_25735584_30882699 . . . . . #> #> chr1_1_5147117 . 4.27888932 . . 0.01467177 . #> chr1_5147118_10294233 . . . . . 6.83684598 #> chr1_10294234_15441350 . 0.04388604 0.04054049 . 0.01467177 . #> chr1_15441351_20588466 . 4.52026345 . . . 0.02546311 #> chr1_20588467_25735583 1.64039695 . . . . . #> chr1_25735584_30882699 0.03185237 0.02194303 0.02702700 . . . #> #> chr1_1_5147117 . 0.04311184 . . . #> chr1_5147118_10294233 0.01666097 0.06466778 0.01510406 . . #> chr1_10294234_15441350 . . . 0.01777363 . #> chr1_15441351_20588466 0.01666097 . . 7.50047211 . #> chr1_20588467_25735583 0.01666097 5.28120071 0.01510406 . . #> chr1_25735584_30882699 0.03332194 4.09562584 . 0.01777363 0.01652352 #> #> chr1_1_5147117 . 1.46896892 0.0173669 . . . #> chr1_5147118_10294233 . 0.01650527 4.0812225 . . . #> chr1_10294234_15441350 . 0.01650527 . 0.03483344 . . #> chr1_15441351_20588466 0.05352164 . . . . . #> chr1_20588467_25735583 . 0.01650527 . 0.01741672 0.01818623 . #> chr1_25735584_30882699 . . . 0.01741672 0.01818624 . #> #> chr1_1_5147117 . . . 0.01845573 . . #> chr1_5147118_10294233 . . . . . . #> chr1_10294234_15441350 0.02060708 0.01750144 0.03550827 . . . #> chr1_15441351_20588466 . . . 1.14425577 0.02843105 . #> chr1_20588467_25735583 0.02060708 0.01750144 . . 0.01421552 . #> chr1_25735584_30882699 0.06182124 0.05250434 0.01775414 . . . #> #> chr1_1_5147117 . . . . . #> chr1_5147118_10294233 0.01391218 . 0.03297133 . 0.02871468 #> chr1_10294234_15441350 . . 0.03297132 0.01726658 . #> chr1_15441351_20588466 . . . 0.03453316 . #> chr1_20588467_25735583 . . . . . #> chr1_25735584_30882699 3.21371296 5.242545 . 3.29791674 0.02871468 #> #> chr1_1_5147117 . . . . . #> chr1_5147118_10294233 1.35507275 0.03716923 . . . #> chr1_10294234_15441350 . . . 2.574490 0.02251518 #> chr1_15441351_20588466 . 4.05144588 0.01542178 3.353795 4.18782494 #> chr1_20588467_25735583 0.01882045 . . 4.634081 0.02251518 #> chr1_25735584_30882699 . 1.46818452 . . . #> #> chr1_1_5147117 . . 0.03322222 . . #> chr1_5147118_10294233 9.3576513 . 0.03322222 . 0.03324781 #> chr1_10294234_15441350 . . . . 0.03324780 #> chr1_15441351_20588466 . . 7.75738891 0.02124478 . #> chr1_20588467_25735583 . 1.34930265 . . 0.01662390 #> chr1_25735584_30882699 0.0187153 0.03212626 0.01661111 . . #> #> chr1_1_5147117 . . 3.56683867 . . . #> chr1_5147118_10294233 . . . . . 0.0202084 #> chr1_10294234_15441350 . . . . 0.03852539 . #> chr1_15441351_20588466 0.01987962 . 0.01819816 . . 0.0202084 #> chr1_20588467_25735583 . 0.02216836 . . . . #> chr1_25735584_30882699 0.01987962 . . . . 0.0202084 #> #> chr1_1_5147117 . 0.01695911 . . 3.01552563 #> chr1_5147118_10294233 0.01539733 . . 0.03923335 0.01743079 #> chr1_10294234_15441350 . . 0.04563145 0.01961667 2.66690995 #> chr1_15441351_20588466 . . . . . #> chr1_20588467_25735583 . . . . 0.03486157 #> chr1_25735584_30882699 . . 0.03042097 . . #> #> chr1_1_5147117 3.9033541 #> chr1_5147118_10294233 0.0215655 #> chr1_10294234_15441350 . #> chr1_15441351_20588466 . #> chr1_20588467_25735583 . #> chr1_25735584_30882699 .