Number of cells before & after correlation filtering

Number of cells before & after correlation filtering

num_cell_after_cor_filt_scExp(scExp, scExp_cf)

Arguments

scExp	SingleCellExperiment object before correlation filtering.
scExp_cf	SingleCellExperiment object atfer correlation filtering.

Value

A colored kable with the number of cells per sample before and after filtering for display

Examples

data("scExp")
scExp_cf = correlation_and_hierarchical_clust_scExp(scExp)
scExp_cf = filter_correlated_cell_scExp(scExp_cf,
corr_threshold = 99, percent_correlation = 1)
#> ChromSCape::filter_correlated_cell_scExp - Calculating correlation threshold using random matrix values...
#> ChromSCape::filter_correlated_cell_scExp - Filtering low correlated cells...
#> ChromSCape::filter_correlated_cell_scExp - Re-calculating hierarchical clustering...
if (FALSE) num_cell_after_cor_filt_scExp(scExp,scExp_cf)