Load and format MSIGdb pathways using msigdbr package

Source: R/diff_analysis_gene_set_enrichment.R

Load and format MSIGdb pathways using msigdbr package

load_MSIGdb(ref, GeneSetClasses)

Arguments

ref

Reference genome, either mm10 or hg38
GeneSetClasses

Which classes of MSIGdb to load

Value

A list containing the GeneSet (list), GeneSetDf (data.frame) and GenePool character vector of all possible genes