Does SingleCellExperiment has genomic coordinates in features ?

Source: R/preprocessing_filtering_reduction.R

Does SingleCellExperiment has genomic coordinates in features ?

has_genomic_coordinates(scExp)

Arguments

scExp

A SingleCellExperiment object

Value

TRUE or FALSE

Examples


scExp = create_scExp(create_scDataset_raw()$mat,create_scDataset_raw()$annot)

#> ChromSCape::create_scExp - the matrix has 300 cells and 600 features.
has_genomic_coordinates(scExp)

#> [1] TRUE
scExp_gene = create_scExp(create_scDataset_raw(featureType="gene")$mat,
  create_scDataset_raw(featureType="gene")$annot)

#> ChromSCape::create_scExp - the matrix has 300 cells and 600 features.
has_genomic_coordinates(scExp_gene)

#> [1] FALSE