Get SingleCellExperiment's genomic coordinates

Source: R/preprocessing_filtering_reduction.R

Get SingleCellExperiment's genomic coordinates

get_genomic_coordinates(scExp)

Arguments

scExp

A SingleCellExperiment object.

Value

A GRanges object of genomic coordinates.

Examples


scExp = create_scExp(create_scDataset_raw()$mat,create_scDataset_raw()$annot)

#> ChromSCape::create_scExp - the matrix has 300 cells and 600 features.
feature_GRanges = get_genomic_coordinates(scExp)