Get Main experiment of a SingleCellExperiment

getMainExperiment(scExp)

Arguments

scExp	A SingleCellExperiment with named mainExp and altExps.

Value

The swapped SingleCellExperiment towards "main" experiment

Examples

data(scExp)
getMainExperiment(scExp)
#> class: SingleCellExperiment 
#> dim: 5499 106 
#> metadata(6): hc_cor consclust ... diff enr
#> assays(2): counts normcounts
#> rownames(5499): chr1_6025000_6030000 chr1_20185000_20190000 ...
#>   chrX_154395000_154400000 chrX_154545000_154550000
#> rowData names(4): ID Gene distanceToTSS top_feature
#> colnames(106): scChIP_Jurkat_K4me3_BC1062721
#>   scChIP_Jurkat_K4me3_BC12143233 ... scChIP_Ramos_K4me3_BC78985057
#>   scChIP_Ramos_K4me3_BC9280513
#> colData names(9): barcode cell_id ... cell_cluster cell_cluster_color
#> reducedDimNames(3): PCA UMAP Cor
#> mainExpName: main
#> altExpNames(0):