Concatenate single-cell BED into clusters

Source: R/coverage.R

Concatenate single-cell BED into clusters

concatenate_scBed_into_clusters(affectation, files_list, odir)

Arguments

affectation

Annotation data.frame containing cluster information
files_list

Named list of scBED file paths to concatenate. List Names must match affectation$sample_id and basenames must match affectation$barcode.
odir

Output directory to write concatenate pseudo-bulk BEDs.

Value

Merge single-cell BED files into cluster BED files. Ungzip file if BED is gzipped.