Count bed files on interval to create count indexes

Source: R/preprocessing_filtering_reduction.R

Count bed files on interval to create count indexes

beds_to_matrix_indexes(dir, which, BPPARAM = BiocParallel::bpparam())

Arguments

dir

A directory containing the single cell BED files
which

Genomic Range on which to count
BPPARAM

BPPARAM object for multiprocessing. See bpparam for more informations. Will take the default BPPARAM set in your R session.

Value

A list containing a "feature index" data.frame and a names of cells as vector both used to form the sparse matrix