Find nearest peaks of each gene and return refined annotation

Source: R/peak_calling.R

Find nearest peaks of each gene and return refined annotation

annotation_from_merged_peaks(scExp, odir, merged_peaks, geneTSS_annotation)

Arguments

scExp

A SingleCellExperiment object
odir

An output directory where to write the mergedpeaks BED file
merged_peaks

A list of GRanges object containing the merged peaks
geneTSS_annotation

A GRanges object with reference genes

Value

A data.frame with refined annotation