Run differential analysis in Pairwise mode

Source: R/diff_analysis_gene_set_enrichment.R

Run differential analysis in Pairwise mode

DA_pairwise(
  affectation,
  nclust,
  counts,
  method,
  feature,
  block,
  progress = NULL,
  BPPARAM = BiocParallel::bpparam()
)

Arguments

affectation

An annotation data.frame with cell_cluster and cell_id columns
nclust

Number of clusters
counts

Count matrix
method

DA method, Wilcoxon or edgeR
feature

Feature data.frame
block

Blocking feature
progress

A shiny Progress instance to display progress bar.
BPPARAM

BPPARAM object for multiprocessing. See bpparam for more informations. Will take the default BPPARAM set in your R session.

Value

A list of results, groups compared and references