Differential Analysis in 'One vs Rest' mode

Source: R/diff_analysis_gene_set_enrichment.R

Differential Analysis in 'One vs Rest' mode

DA_one_vs_rest_fun(
  affectation,
  nclust,
  counts,
  method,
  feature,
  block,
  progress = NULL,
  BPPARAM = BiocParallel::bpparam()
)

Arguments

affectation

An annotation data.frame with cell_id and cell_cluster columns
nclust

Number of clusters
counts

Count matrix
method

DA method : Wilcoxon or EdgeR
feature

Feature tables
block

Blocking feature
progress

A shiny Progress instance to display progress bar.
BPPARAM

BPPARAM object for multiprocessing. See bpparam for more informations. Will take the default BPPARAM set in your R session.

Value

A list of results, groups compared and references